Ameline, C., Bourgeois, Y., Vögtli, F., Savola, E., Andras, J., Engelstädter, J. and Ebert, D. (2020) ‘A two-locus system with strong epistasis underlies rapid parasite-mediated evolution of host resistance’, Molecular biology and evolution, p. 1. doi: 10.1093/molbev/msaa311.   edoc
Andras, J. P., Fields, P. D., Du Pasquier, L., Fredericksen, M. and Ebert, D. (2020) ‘Genome-Wide Association Analysis Identifies a Genetic Basis of Infectivity in a Model Bacterial Pathogen’, Molecular biology and evolution, 37(12), pp. 3439-3452. doi: 10.1093/molbev/msaa173.   edoc
Ebert, D. and Fields, P. D. (2020) ‘Host-parasite co-evolution and its genomic signature’, Nature reviews. Genetics, 21(12), pp. 754-768. doi: 10.1038/s41576-020-0269-1.   edoc
Bento, G., Fields, P. D., Duneau, D. and Ebert, D. (2020) ‘An alternative route of bacterial infection associated with a novel resistance locus in the Daphnia-Pasteuria host-parasite system’, Heredity, 125(4), pp. 173-183. doi: 10.1038/s41437-020-0332-x.   edoc
de Albuquerque, N. R. M., Ebert, D. and Haag, K. L. (2020) ‘Transposable element abundance correlates with mode of transmission in microsporidian parasites’, Mobile DNA, 11, p. 19. doi: 10.1186/s13100-020-00218-8.   edoc
Ho, E. K. H., Macrae, F., Latta, L. C., McIlroy, P., Ebert, D., Fields, P. D., Benner, M. J. and Schaack, S. (2020) ‘High and Highly Variable Spontaneous Mutation Rates in Daphnia’, Molecular Biology and Evolution . Oxford University Press, 37(11), pp. 3258-3266. doi: 10.1093/molbev/msaa142.   edoc | Open Access
Haag, K. L., Pombert, J.-F., Sun, Y., de Albuquerque, N. R. M., Batliner, B., Fields, P., Lopes, T. F. and Ebert, D. (2020) ‘Microsporidia with Vertical Transmission Were Likely Shaped by Nonadaptive Processes’, Genome Biology and Evolution. Oxford University Press, 12(1), pp. 3599-3614. doi: 10.1093/gbe/evz270.   edoc
Narr, C. F., Ebert, D., Bastille-Rousseau, G. and Frost, P. C. (2019) ‘Nutrient availability affects the prevalence of a microsporidian parasite’, JOURNAL OF ANIMAL ECOLOGY. WILEY, 88(4), pp. 579-590. doi: 10.1111/1365-2656.12945.   edoc
Ho, E. K. H., Macrae, F., Latta, L. C., Benner, M. J., Sun, C., Ebert, D. and Schaack, S. (2019) ‘Intraspecific Variation in Microsatellite Mutation Profiles in Daphnia magna’, MOLECULAR BIOLOGY AND EVOLUTION. OXFORD UNIV PRESS, 36(9), pp. 1942-1954. doi: 10.1093/molbev/msz118.   edoc
Dukic, M., Berner, D., Haag, C. R. and Ebert, D. (2019) ‘Data from: How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna ’. Dryad . doi: 10.5061/Dryad.C9q4gt6.   edoc
Mushegian, A. A., Arbore, R., Walser, J.-C. and Ebert, D. (2019) ‘Data from: Environmental sources of bacteria and genetic variation in behavior influence host-associated microbiota ’. Dryad . doi: 10.5061/Dryad.G75r459.   edoc
Czypionka, T., Fields, P. D., Routtu, J., van den Berg, E., Ebert, D. and De Meester, L. (2019) ‘The genetic architecture underlying diapause termination in a planktonic crustacean’, Molecular Ecology. Wiley, 28(5), pp. 998-1008. doi: 10.1111/mec.15001.   edoc
Brun, N. R., Fields, P. D., Horsfield, S., Mirbahai, L., Ebert, D., Colbourne, J. K. and Fent, K. (2019) ‘Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna’, Environmental Science and Technology. American Chemical Society, 53(3), pp. 1639-1649. doi: 10.1021/acs.est.8b05457.   edoc
Cornetti, L., Fields, P. D., Van Damme, K. and Ebert, D. (2019) ‘A fossil-calibrated phylogenomic analysis of Daphnia and the Daphniidae ’, Molecular Phylogenetics and Evolution. Elsevier, 137, pp. 250-262. doi: 10.1016/j.ympev.2019.05.018.   edoc
Dukic, M., Berner, D., Haag, C. R. and Ebert, D. (2019) ‘How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna ’, Journal of Evolutionary Biology. Wiley, 32(6), pp. 619-628. doi: 10.1111/jeb.13443.   edoc
Hall, M. D., Routtu, J. and Ebert, D. (2019) ‘Dissecting the genetic architecture of a stepwise infection process’, Molecular Ecology. Wiley, 28(17), pp. 3942-3957. doi: 10.1111/mec.15166.   edoc
Martin-Creuzburg, D., Coggins, B. L., Ebert, D. and Yampolsky, L. Y. (2019) ‘Rearing Temperature and Fatty Acid Supplementation Jointly Affect Lipid Fluorescence Polarization and Heat Tolerance in Daphnia ’, Physiological and Biochemical Zoology. The University of Chicago Press, 92(4), pp. 408-418. doi: 10.1086/704365.   edoc
Mushegian, A. A., Arbore, R., Walser, J.-C. and Ebert, D. (2019) ‘Environmental Sources of Bacteria and Genetic Variation in Behavior Influence Host-Associated Microbiota ’, Applied and Environmental Microbiology. Edited by A. J. M. Stams. American Society for Microbiology, 85(8), pp. e01547-18. doi: 10.1128/AEM.01547-18.   edoc
Savola, E. and Ebert, D. (2019) ‘Assessment of parasite virulence in a natural population of a planktonic crustacean ’, BMC ecology. BioMed Central, 19, p. 14. doi: 10.1186/s12898-019-0230-3.   edoc
Seefeldt, L. and Ebert, D. (2019) ‘Temperature - versus precipitation-limitation shape local temperature tolerance in a Holarctic freshwater crustacean’, Proceedings of the Royal Society. Series B, Biological Sciences. The Royal Society, 286(1907), p. 20190929. doi: 10.1098/rspb.2019.0929.   edoc
Dukic, M., Berner, D., Haag, C. R. and Ebert, D. (2019) ‘Data from: How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna’, Dryad, p. 1. doi: 10.5061/Dryad.C9q4gt6.   
Mushegian, A. A., Arbore, R., Walser, J.-C. and Ebert, D. (2019) ‘Data from: Environmental sources of bacteria and genetic variation in behavior influence host-associated microbiota’, Dryad, p. 1. doi: 10.5061/Dryad.G75r459.   
Mushegian, A., Walser, J.-C., Sullam, K. E. and Ebert, D. (2018) ‘The microbiota of diapause: how host-microbe associations are formed after dormancy in an aquatic crustacean’, Journal of Animal Ecology, 87(2), pp. 400-413. doi: 10.1111/1365-2656.12709.   edoc
Toenshoff, E. R., Fields, P. D., Bourgeois, Y. X. and Ebert, D. (2018) ‘The End of a 60-year Riddle: Identification and Genomic Characterization of an Iridovirus, the Causative Agent of White Fat Cell Disease in Zooplankton’, G3-Genes Genomes Genetics. Genetics Society of America, 8(4), pp. 1259-1272. doi: 10.1534/g3.117.300429.   edoc | Open Access
Sullam, K. E., Pichon, S., Schaer, T. M. M. and Ebert, D. (2018) ‘The Combined Effect of Temperature and Host Clonal Line on the Microbiota of a Planktonic Crustacean’, Microbial Ecology. Springer, 76(2), pp. 506-517. doi: 10.1007/s00248-017-1126-4.   edoc
Sison-Mangus, M. P., Metzger, C. M. J. A. and Ebert, D. (2018) ‘Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen’, Scientific Reports. Nature Research, 8(9407), pp. 1-10. doi: 10.1038/s41598-018-27681-x.   edoc | Open Access
Preiswerk, D., Walser, J.-C. and Ebert, D. (2018) ‘Temporal dynamics of microbiota before and after host death’, Isme Journal. Springer nature, 12(8), pp. 2076-2085. doi: 10.1038/s41396-018-0157-2.   edoc | Open Access
Gerber, N., Kokko, H., Ebert, D. and Booksmythe, I. (2018) ‘Daphnia invest in sexual reproduction when its relative costs are reduced’, Proceedings of the Royal Society B-Biological Sciences. The Royal Society, 285(1871), pp. 1-9. doi: 10.1098/rspb.2017.2176.   edoc
Fields, P. D., Obbard, D. J., McTaggart, S. J., Galimov, Y., Little, T. J. and Ebert, D. (2018) ‘Mitogenome phylogeographic analysis of a planktonic crustacean’, Molecular Phylogenetics and Evolution. Elsevier, 129, pp. 138-148. doi: 10.1016/j.ympev.2018.06.028.   edoc
Ebert, D. (2018) ‘Open questions: what are the genes underlying antagonistic coevolution?’, BMC Biology. BMC, 16(114), p. 1. doi: 10.1186/s12915-018-0583-7.   edoc | Open Access
Ebert, B., Ebert, D., Koebsch, K., Maser, E. and Kisiela, M. (2018) ‘Carbonyl reductases from Daphnia are regulated by redox cycling compounds’, Febs Journal. Wiley, 285(15), pp. 2869-2887. doi: 10.1111/febs.14578.   edoc
Booksmythe, I., Gerber, N., Ebert, D. and Kokko, H. (2018) ‘Daphnia females adjust sex allocation in response to current sex ratio and density’, Ecology Letters. Wiley, 21(5), pp. 629-637. doi: 10.1111/ele.12929.   edoc
Andras, J. P., Fields, P. D. and Ebert, D. (2018) ‘Spatial population genetic structure of a bacterial parasite in close coevolution with its host’, Molecular Ecology. Wiley, 27(6), pp. 1371-1384. doi: 10.1111/mec.14545.   edoc
Mushegian, A. A. and Ebert, D. (2017) ‘Presence of microbiota reverses the relative performance of Daphnia on two experimental diet’, Zoology. Elsevier GmbH, 125, pp. 29-31. doi: 10.1016/j.zool.2017.07.007.   edoc
Hall, M. D., Bento, G. and Ebert, D. (2017) ‘The Evolutionary Consequences of Stepwise Infection Processes’, Trends in Ecology & Evolution. Elsevier, 32(8), pp. 612-623. doi: 10.1016/j.tree.2017.05.009.   edoc
Brun, N. R., Beenakker, M. M. T., Hunting, E. R., Ebert, D. and Vijver, M. G. (2017) ‘Brood pouch-mediated polystyrene nanoparticle uptake during Daphnia magna embryogenesis’, Nanotoxicology. Taylor & Francis, 11(8), pp. 1059-1069. doi: 10.1080/17435390.2017.1391344.   edoc
Bourgeois, Y. X., Roulin, A. C., Muller, K. and Ebert, D. (2017) ‘Parasitism drives host genome evolution: Insights from the Pasteuria ramosa-Daphnia magna system ’, Evolution. Blackwell, 71(4), pp. 1106-1113. doi: 10.1111/evo.13209.   edoc
Bento, G., Routtu, J., Fields, P. D., Bourgeois, Y. X., Du Pasquier, L. and Ebert, D. (2017) ‘The genetic basis of resistance and matching-allele interactions of a host-parasite system: The Daphnia magna-Pasteuria ramosa model’, PLoS Genetics. Public Library of Science, 13(2), p. e1006596. doi: 10.1371/journal.pgen.1006596.   edoc
Krebs, M., Routtu, J. and Ebert, D. (2017) ‘QTL mapping of a natural genetic polymorphism for long-term parasite persistence in Daphnia populations’, Parasitology. Cambridge University Press, 144(13), pp. 1686-1694. doi: 10.1017/s0031182017001032.   edoc
Orsini, L., Gilbert, D., Podicheti, R., Jansen, M., Brown, J. B., Solari, O. S., Spanier, K. I., Colbourne, J. K., Rusch, D. B., Decaestecker, E., Asselman, J., De Schamphelaere, K. A. C., Ebert, D., Haag, C. R., Kvist, J., Laforsch, C., Petrusek, A., Beckerman, A. P., Little, T. J., Chaturvedi, A., Pfrender, M. E., De Meester, L. and Frilander, M. J. (2017) ‘Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors (vol 3, 160030, 2016)’, Scientific Data, 4, p. 170006. doi: 10.1038/sdata.2016.30.