About us

Plants accommodate and continuously interact with a species-rich microbiota including a multitude of bacteria, fungi or oomycetes. These microbes collectively function as a microbiome and, similar to the microbial communities in human or animal guts, they impact nutrition and health of their host. For instance, plant microbiota members can improve nutrient acquisition or provide pathogen protection. In our research we address the following fundamental questions of plant microbiome biology:

- How do plants communicate with the root microbiota and take influence on their activities?

- What is the functional contribution of the root microbiota to plant growth and disease protection?

Ultimately, our research mission is that beneficial plant microbiome interactions can be implemented in smart and sustainable agriculture. We mainly work with Arabidopsis thaliana and Zea mays as models and we combine field and laboratory experiments with methods in microbiomics, molecular biology, microbiology, plant genetics and bioinformatics.

 

 

 

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Address

University of Basel
Department of Environmental Sciences
Plant Microbe Interactions
Bernoullistrasse 32
CH-4056 Basel

 

News

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Poster prize for Romina Kalbermatten at the SSP meeting

16.09.2026
Congratulations to Romina Kalbermatten, who received a prize for her poster “Future climatic conditions intensify soilborne diseases in table beet seedlings”, presented at the autumn meeting of the Swiss Society of Phytiatry on 10 September in the beautiful Merian Gardens in Basel.
The poster presents findings from Romina’s Master’s thesis, in which she investigated how future climatic conditions affect seedling damping-off in table beet. Combining pot experiments, microbiome analyses, and infection experiments, she found that disease severity increases under future climatic conditions and is associated with changes in abundance of specific fungal taxa.

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Group Outing: Hike to Discover the Basel-Land Hills and Gorges

01.09.2026
To kick off the new semester on the right foot, a group outing was in order! We decided to explore the hills of Basel-Land, making our way to the famous Stiron sculpture by Franz Stirnimann, and then walking through the “Tüfelsschlucht”, one of the most beautiful gorges in the Jura Mountains. We started the day with a good Gipfeli on the train before arriving in the small village of Langenbruck. From there, we set off through forests and farmland. With good energy, plenty of chats, we eventually reached the sculpture, where we enjoyed a beautiful view over the Olten region. After a well-deserved picnic lunch, we continued our descent towards Hägendorf crossing through the Tüfelsschlucht. The path was beautiful, slightly dry after this warm summer, but still made for a great part of the hike. We ended the day with some very good ice cream cups — the perfect reward after a day of walking!

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